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Basics of Supercritical Fluid Chromatography
SFC Basics Course
1 - What are Supercritical Fluids and the History of SFC
2 - SFC Instrumentation and Advantages of SFC
3 - SFC Analytical Operating Conditions Part I Stationary Phases
4 - SFC Analytical Operating Conditions Part 2 Mobile Phases and Other Parameters
5 - Preparative SFC
Welcome Back!
Welcome back for this third session on a brief introduction into supercritical fluid chromatography. Hopefully you are now aware of what a supercritical fluid is and how an SFC instrument needs to be adapted in comparison to an LC to work efficiently. The operating parameters can highly influence the success of the chromatographic separation, therefore, it is important to know which variables need to be investigated. In this section, we will look at the effect of stationary phase type.
The approach for the SFC analytical condition development process is basically the same as for determining analytical conditions for HPLC. HPLC can generally target any component in compounds that can be dissolved in the mobile phase. In contrast, SFC can be used to analyse any compound that is compatible with supercritical carbon dioxide and can be dissolved in an organic solvent. If chromatography is used for quantitative analysis, then optimal analytical conditions should achieve resolution of 1.5 or more. The basic equation for calculating resolution Rs is indicated below

The α, k, and N values that affect Rs are all independent factors that vary depending on the column and mobile phase used, where N represents separation efficiency and α selectivity. In particular, separation can be improved by increasing N and α values. The supercritical carbon dioxide used for SFC offers different properties than mobile phase solvents used for HPLC, therefore when a column used for HPLC is used for SFC, it can sometimes result in different elution behaviour (Fig. 1).

Fig. 1 Separation of three types of pharmaceutical ingredients (upper: HPLC, Lower: SFC)
SFC Stationary Phases
The mobile phase is one of the most influential parameters in resolving compounds of interest. While pure supercritical CO2 is effective at separating non-polar analytes such as fats, triglycerides, esters / ethers and silicones / siloxanes, it is inadequate at separating other more polar compounds, particularly in achiral separations. Historically, the solvating power was adjusted by increasing the supercritical fluid density through higher, thereby reducing retention, however, this approach has a limited impact. A pressure gradient with pure supercritical CO2 can effectively adjust retention times by exploiting changes in the compressibility of the mobile phase.1 The most typical way to adjust solvation power in modern laboratories is to include a polar organic modifier such as methanol (typically up to 40% v/v) to adjust selectivity.
When determining the mobile phase for HPLC, factors such as the acid/base level, the addition of ion-pair reagents or other modifiers, and other factors that help separation must be considered. For SFC, separation is affected by the type and amount of modifier, the acid or other additives present in the modifier, as well as the pressure and temperature required to keep the CO2 in a supercritical state.
Due to the non-polarity of supercritical carbon dioxide, a modifier such as methanol, ethanol, or acetonitrile can be added to provide polarity to the mobile phase (Fig. 1). Increasing the modifier quantity could break down the supercritical fluid state of the CO2 by changing the conditions required to make CO2 supercritical. This could potentially change it to a subcritical or liquid state. It is advisable to maintain good chromatography to keep the mobile phase in a single state.

Fig. 1 Polarity range of mobile phases on a range of compound classifications
In HPLC, reversed phase and normal phase chromatography exhibit opposing solvent–analyte interactions, which influence the elution power of the mobile phase. In SFC, however, supercritical CO₂ consistently has low elution strength, while the modifier provides high elution capability in both reversed phase and normal phase modes. Table 1 lists common solvents used as modifiers, and Fig. 2 compares chromatograms obtained with different modifiers.

Fig. 2 Comparison of modifiers
Table 1 Examples of solvents used as modifiers
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Organic Solvent LogPOW Hexane 3.9 Toluene 2.69 Tetrahydrofuran 0.47 1-propanol 0.33 2-propanol 0.05 -
Organic Solvent LogPOW Acetone -0.24 Dioxane -0.27 Ethanol -0.32 Acetonitrile -0.34 Methanol -0.82
Preparative LC is a technique used to purify samples for specific target components. It is used in a wide range of fields, including chemicals, pharmaceuticals, and foods. Preparative LC serves as a powerful tool for achieving higher purity and recovery rate levels of target components, but it requires drying and powderising steps.
SFC can improve preparative workflow efficiency by significantly reducing the amount of work involved in the powderisation process after preparative purification. The Nexera UC product line includes three systems—a stacked fraction system intended for large-volume fractionation, a multi-fraction system for separating multiple peaks, and an analytical fraction system intended for analysis-scale fractionation.
These products also feature Shimadzu’s unique gas-liquid separator (patented) that inhibits sample dispersion and carryover to obtain high recovery rates. Therefore, excellent recovery rates can be achieved even for highly volatile compounds, such as the fragrance linalool, regardless of the flow rate or modifier concentration. The following sections describe the three product lines and the gas-liquid separator.
Effect of Additives
The role of an additive is to alter the ionisation states of the analytes of interest. It is good chromatographic practice to either fully suppress or fully ionise the compound to put it into one state. This should facilitate good peak shape.
Additives can also enhance the solvating power of the mobile phase, causing selectivity differences which is advantageous for method development.
The most common additives are divided into:
- (1) Basic. i.e. ammonium hydroxide
- (2) Acidic i.e. formic acid, trifluoroacetic acid
- (3) Salts i.e. ammonium acetate, ammonium formate
A small amount of water (~1-5%) can also cause selectivity differences. As water is not miscible with CO2, it requires the polar modifier like methanol to improve solubility into the supercritical fluid. The inclusion of water in the mobile phase helps to expand the range of SFC by separating a wider array of hydrophobicities. It can also influence selectivity and improve efficiency and peak shapes.
Another benefit of water is in the prevention of silyl ether formation on the surface of the stationary phase. A silica packed bed stationary phase will have silanol groups on the silica surface, even with endcapping. It is impossible to remove them all. Under SFC conditions where an alcohol modifier is employed, a silyl ether is created, which changes the stationary phases hydrophilicity, thereby altering selectivity and retention time. It can cause significant retention time drifts which will impact on reproducibility. If water is present, it can hydrolyse the silyl ether back to silanols.
For HPLC analysis, buffer solutions, ion-pair reagents, or other additives are used to change separation selectivity or improve peak shape. Additives are used for the same reasons in SFC as well. Additives used for SFC are added to the modifier rather than the supercritical carbon dioxide. The main additives used are listed in Table 2. Adding an acid such as acetic acid or a base such as an amine can improve peak shape by inhibiting ionisation of target components or by masking secondary functional groups in the stationary phase (Fig.3). For LC-MS detection, a volatile salt such as ammonium formate is often used because ion suppression can occur. It has been reported that adding a small amount of water ionises part of the supercritical carbon dioxide so that it behaves like an acidic additive.2

Fig. 3 Effect of peak shape on salt or acid type added to modifier
Table 2 Examples of additives and applicable compounds
Acid | Acetic acid, formic acid, trifluoroacetic acid, citric acid |
---|---|
Base | Triethylamine, ammonium hydroxide |
Ion pair reagent | Alkylbenzoic acid, sulfonate salts, tetrabutyl ammonium salts |
Volatile salt | Ammonium formate, ammonium acetate |
Other | Water |

Effect of Pressure

As explained previously, pressure can be used as a parameter to adjust retentivity when pure supercritical CO2 is employed as the mobile phase. This is because it is a relatively straight forward relationship between increasing pressure and impacting on density. However, the relationship becomes quite complicated when a modifier is included, as the different concentration of organic modifier will have a different impact on the density, thereby reducing the influence as an operating parameter.
The addition of the modifier will cause the critical point of CO2 to increase which means a higher pressure is required to make it supercritical. It is undesirable to have a phase transition occur within the column as this will cause peaks to broaden due to mass transfer problems, and also detector noise, causing poor limits of detection.
Also bear in mind that it is possible for selectivity differences to occur when changing between different particle sizes as the pressure increases with smaller particle morphologies. Sub 2μm particles can also cause frictional heating along the length of the column bed where the head of the column is cooler than the end of the column. This can impact the retention times of analytes.
Effect of Temperature

Fig. 4 Change in critical point of CO2 with the introduction of an organic modifier
Changing temperature is a key operating parameter to affect subtle changes in selectivity. Selectivity is much more temperature sensitive in SFC than in HPLC. However, it is always important to consider the impact on the critical point of the supercritical fluid to avoid issues with a two-phase system.
For SFC, the temperature and pressure can affect the change in CO2 state, which changes the density, diffusion coefficient, and other properties of the CO2. Therefore, the temperature and pressure setting values are factors that can potentially affect separation (Fig. 4). As explained in last week’s course, regarding the van Deemter equation, the large diffusion coefficient makes it easier for supercritical carbon dioxide to penetrate other substances, which results in a lower C value that is related to the mass transfer diffusion and enables higher separation efficiency. Increasing the temperature increases the diffusion coefficient and decreases the viscosity, which enables using a longer column and measuring samples at higher flow rates. Temperature and pressure mainly contribute to the number of theoretical plates, but the number of theoretical plates contributes to resolution by a factor equivalent to its square root. That means it does not have a large effect compared to modifiers, stationary phases, or other parameters that contribute to the selectivity of separation
That brings us to the end of the fourth session. In this course, we looked at the mobile phase contribution to the analytical operating conditions. This includes the effect of organic modifier and additives. We also looked at the critical role the pressure and temperature can have on the chromatographic separation. Next week, we will dive into SFC with preparative chromatography.
Your Shimadzu Chromatographic Team
References
1Programming of pressure and mobile phase composition at constant flow rate using a self adjusting valve in supercritical fluid chromatography, S. Küppers, B. Lorenschat, F.P. Schmitz, E. Klesper, J. Chromatogr. A, 1989, 475, 85–94
2Packed column supercritical fluid chromatography of hydrophilic analytes via water-rich modifiers, L. Taylor, J. Chromatogr. A, 2012, 1250, 196-204
Mini Quiz
(1) Can water be used in the organic modifier in SFC?
Not at all
Yes, but only 1-5% of the modifier
Yes, it can be freely used
(2) Why are modifiers used in the mobile phase? (select three)
To extend the range of compounds to be analysed
To stabilise the column
To improve resolution by altering selectivity
To make sure the CO2 is supercritical
To control retention times
(3) In the phase diagram, does the introduction of the modifier move the critical point to the:
Right of the pure CO2 critical point
Left of the pure CO2 critical point
Scroll down for the answers!
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Answers!
(1) Can water be used in the organic modifier in SFC?
Yes, but only 1-5% of the modifier ü
(2) Why are modifiers used in the mobile phase? (select three)
To extend the range of compounds to be analysed ü
To improve resolution by altering selectivity ü
To control retention times ü
(3) In the phase diagram, does the introduction of the modifier move the critical point to the:
Right of the pure CO2 critical point ü